| Department of Computer Science

Juho Rousu

Contact Information

Email: Juho.Rousu[at]cs.helsinki.fi

Mobile: +358 50 415 1702

Kotisivu: http://www.cs.helsinki.fi/u/rousu/

Vastaanottoaika: No regular office hours. Email juho.rousu@aalto.fi to set up a meeting

Room: D211

Phone: (09) 19151352

Principal Investigator of

Kernel Machines, Pattern Analysis and Computational Biology

2012

Efficient Path Kernels for Reaction Function Prediction

Heinonen, M., Välimäki, N., Mäkinen, V. & Rousu, J. 2012 International Conference on Bioinformatics Models, Methods and Algorithms. INSTICC

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

2011

Computing Atom Mappings for Biochemical Reactions without Subgraph Isomorphism

Heinonen, M., Lappalainen, S., Mielikäinen, T. J. & Rousu, J. 06.01.2011 In : Journal of Computational Biology. 18, 1, p. 43-58.

Publication: Contribution to journal âº A1 Refereed journal article

Minimum mutation algorithm for gapless metabolic network evolution

Pitkänen, E., Arvas, M. & Rousu, J. 2011

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Minimum mutation algorithm for gapless metabolic network evolution

Pitkänen, E., Arvas, M. & Rousu, J. 2011

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Multi-Task Drug Bioactivity Classification with Graph Labeling Ensembles

Rousu, J. & Su, H. 04.11.2011

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Multi-Task Drug Bioactivity Classification with Graph Labeling Ensembles

Rousu, J. & Su, H. 04.11.2011 p. 157-167. 11 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Sparse Canonical Correlation Analysis for Biomarker Discovery: A Case Study in Tuberculosis

Rousu, J., Agranoff, D., Shawe-Taylor, J. & Fernandez-Reyes, D. 20.07.2011 p. 73. 77 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Sparse Canonical Correlation Analysis for Biomarker Discovery: A Case Study in Tuberculosis

Rousu, J., Agranoff, D., Shawe-Taylor, J. & Fernandez-Reyes, D. 20.07.2011 p. 73. 77 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Structured Output Prediction of Novel Enzyme Function with Reaction Kernels

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J. 28.02.2011 Biomedical Engineering Systems and Technologies . Springer p. 367-378. 13 p. (Communications of Computer and Information Science; 5).

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

Structured Output Prediction of Novel Enzyme Function with Reaction Kernels

Astikainen, K., Holm, L., Pitkanen, E., Szedmak, S. & Rousu, J. 2011 In : Biomedical engineering systems and technologies. 127, p. 367-379. 13 p.

Publication: Contribution to journal âº A1 Refereed journal article

Structured Output Prediction of Novel Enzyme Function with Reaction Kernels

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

2010

Computational methods for metabolic reconstruction

Pitkänen, E., Rousu, J. & Ukkonen, E. 2010 In : Current Opinion in Biotechnology. 21, 1, p. 70-77. 8 p.

Publication: Contribution to journal âº A1 Refereed journal article

Mass Spectrometry Informatics in Systems Biology: Abstracts of the Workshop

Arita, M. (ed.), Heinonen, M. (ed.) & Rousu, J. (ed.) 10.2010 29 p. (Series of Publications C).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Mass Spectrometry Informatics in Systems Biology: Abstracts of the Workshop

Arita, M. (ed.), Heinonen, M. (ed.) & Rousu, J. (ed.) 10.2010 University of Helsinki, Department of Computer Science. 29 p. (Series of Publications C).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Mass Spectrometry Informatics in Systems Biology: Abstracts of the Workshop

Arita, M. (ed.), Heinonen, M. (ed.) & Rousu, J. (ed.) 10.2010 University of Helsinki, Department of Computer Science. 29 p. (Series of Publications C).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Multilabel Classiï¬cation of Drug-like Molecules via Max-Margin Conditional Random Fields

Su, H., Heinonen, M. & Rousu, J. 15.09.2010 p. 265-272. 8 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Multilabel Classiï¬cation of Drug-like Molecules via Max-Margin Conditional Random Fields

Su, H., Heinonen, M. & Rousu, J. 15.09.2010 p. 265-272. 8 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Reaction Kernels: Structured Output Prediction Approaches for Novel Enzyme Function

Astikainen, K., Pitkänen, E., Rousu, J., Holm, L. & Szedmak, S. 20.01.2010 p. 48-55.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Structured Output Prediction of Anti-Cancer Drug Activity

Su, H., Heinonen, M. & Rousu, J. 22.09.2010 p. 38-49. 12 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Structured Output Prediction of Anti-Cancer Drug Activity

Su, H., Heinonen, M. & Rousu, J. 22.09.2010 p. 38-49. 12 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

2009

Bioinformatics: technologies and challenges

Rousu, J. 2009 p. 50-57. 8 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Bioinformatics: technologies and challenges

Rousu, J. 2009 p. 50-57. 8 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Inferring branching pathways in genome-scale metabolic networks

Pitkänen, E., Jouhten, P. & Rousu, J. 2009 In : BMC Systems Biology. 3, 103, 22 s

Publication: Contribution to journal âº A1 Refereed journal article

Inferring branching pathways in genome-scale metabolic networks

Pitkänen, E., Jouhten, P. & Rousu, J. 2009 In : BMC Systems Biology. 3, 103, 22 s

Publication: Contribution to journal âº A1 Refereed journal article

Machine learning in systems biology: proceedings of The Third International Workshop, September 5-6, 2009, Ljubljana, Slovenia

Dzeroskig, S. (ed.), Geurts, P. (ed.) & Rousu, J. (ed.) 2009 Helsinki : Helsinki University Printing House. 180 p. (Series of Publications B / Report, University of Helsinki, Department of Computer ScienceB; B-2009-1).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Machine learning in systems biology: proceedings of The Third International Workshop, September 5-6, 2009, Ljubljana, Slovenia

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Reaction kernels: predicting enzyme functions you have never seen before

Astikainen, K., Holm, L. U. T., Pitkänen, E. & Rousu, J. 2009 Helsinki : Helsingin yliopisto, tietojenkäsittelytieteen laitos. 13 p.

Publication: Book/anthology âº C1 Published scientific monograph

Reaction kernels: predicting enzyme functions you have never seen before

Astikainen, K., Holm, L. U. T., Pitkänen, E. & Rousu, J. 2009 Helsinki : Helsingin yliopisto, tietojenkäsittelytieteen laitos. 13 p.

Publication: Book/anthology âº C1 Published scientific monograph

2008

A computational method for reconstructing gapless metabolic networks

Pitkänen, E., Rantanen, A., Rousu, J. & Ukkonen, E. 2008 p. 288-302. 15 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

A computational method for reconstructing gapless metabolic networks

Pitkänen, E., Rantanen, A., Rousu, J. & Ukkonen, E. 2008 p. 288-302. 15 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments

Rantanen, A., Rousu, J., Jouhten, P., Zamboni, N., Maaheimo, H. & Ukkonen, E. 2008 In : BMC Bioinformatics. 9, 266, 19 s

Publication: Contribution to journal âº A1 Refereed journal article

An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments

Rantanen, A., Rousu, J., Jouhten, P., Zamboni, N., Maaheimo, H. & Ukkonen, E. 2008 In : BMC Bioinformatics. 9, 266, 19 s

Publication: Contribution to journal âº A1 Refereed journal article

FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data

Heinonen, M., Rantanen, A., Mielikäinen, T., Kokkonen, J., Kiuru, J., Ketola, R. A. & Rousu, J. 2008 In : Rapid Communications in Mass Spectrometry. 22, 19, p. 3043-3052. 10 p.

Publication: Contribution to journal âº A1 Refereed journal article

FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data

Heinonen, M., Rantanen, A., Mielikäinen, T., Kokkonen, J., Kiuru, J., Ketola, R. A. & Rousu, J. 2008 In : Rapid Communications in Mass Spectrometry. 22, 19, p. 3043-3052. 10 p.

Publication: Contribution to journal âº A1 Refereed journal article

Towards structured output prediction of enzyme function

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J. 2008 In : BMC proceedings. 2(Suppl 4), S2, 10 s

Publication: Contribution to journal âº A1 Refereed journal article

Towards structured output prediction of enzyme function

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J. 2008 In : BMC proceedings. 2(Suppl 4), S2, 10 s

Publication: Contribution to journal âº A1 Refereed journal article

2007

An efficient method for large margin parameter optimization in structured prediction problems

Yu, H. & Rousu, J. 2007 Hki : Helsingin yliopisto, tietojenkäsittelytieteen laitos. 18 p.

Publication: Book/anthology âº C1 Published scientific monograph

An efficient method for large margin parameter optimization in structured prediction problems

Yu, H. & Rousu, J. 2007 Helsinki : Helsingin yliopisto, tietojenkäsittelytieteen laitos. 18 p. (Department of Computer Science, Series of Publications C; C-2007-87).

Publication: Book/anthology âº C1 Published scientific monograph

Efficient algorithms for Max-Margin structured classification

Rousu, J., Saunders, C., Szedmak, S. & Shawe-Taylor, J. 2007 Predicting structured data. Cambridge, Mass : MIT Press cop. p. 105-128. 24 p.

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

Efficient algorithms for Max-Margin structured classification

Rousu, J., Saunders, C., Szedmak, S. & Shawe-Taylor, J. 2007 Predicting structured data. Cambridge, Mass : MIT Press cop. p. 105-128. 24 p.

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

Experiments for Completion of Biological Networks with Output Kernel Trees

Lu, C. & Rousu, J. 2007 Helsinki : Helsingin yliopisto, tietojenkäsittelytieteen laitos. 30 p.

Publication: Book/anthology âº C1 Published scientific monograph

Experiments for Completion of Biological Networks with Output Kernel Trees

Lu, C. & Rousu, J. 2007 Helsinki : Helsingin yliopisto, tietojenkäsittelytieteen laitos. 30 p.

Publication: Book/anthology âº C1 Published scientific monograph

Information theoretic methods for bioinformatics

Rissanen, J., Grunwald, P., Heikkonen, J., Myllymäki, P., Roos, T. & Rousu, J. 2007 In : EURASIP Journal on Bioinformatics and Systems Biology. 2007, Article ID 79128, 2 p.

Publication: Contribution to journal âº A1 Refereed journal article

Information theoretic methods for bioinformatics

Rissanen, J., Grunwald, P., Heikkonen, J., Myllymäki, P., Roos, T. & Rousu, J. 2007 In : EURASIP Journal on Bioinformatics and Systems Biology. 2007, Article ID 79128, 2 p.

Publication: Contribution to journal âº A1 Refereed journal article

Probabilistic modeling and machine learning in structural and systems biology

Kaski, S., Rousu, J. & Ukkonen, E. 2007 In : BMC Bioinformatics. 8, Suppl 2, p. S1.

Publication: Contribution to journal âº A2 Review in scientific journal

Probabilistic modeling and machine learning in structural and systems biology

Kaski, S., Rousu, J. & Ukkonen, E. 2007 In : BMC Bioinformatics. 8, Suppl 2, p. S1.

Publication: Contribution to journal âº A2 Review in scientific journal

Towards structured output prediction of enzyme function (extended abstract)

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J. 2007 p. 27-32. 6 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Towards structured output prediction of enzyme function (extended abstract)

Astikainen, K., Holm, L., Pitkänen, E., Szedmak, S. & Rousu, J. 2007 p. 27-32. 6 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

2006

Ab initio prediction of molecular fragments from tandem mass spectrometry data

Heinonen, M., Rantanen, A., Mielikäinen, T., Pitkänen, E., Kokkonen, J. & Rousu, J. 2006 p. 40-53. 14 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Ab initio prediction of molecular fragments from tandem mass spectrometry data

Heinonen, M., Rantanen, A., Mielikäinen, T., Pitkänen, E., Kokkonen, J. & Rousu, J. 2006 p. 40-53. 14 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Equivalence of metabolite fragments and flow analysis of isotopomer distributions for flux estimation

Rantanen, A., Maaheimo, H., Pitkänen, E., Rousu, J. & Ukkonen, E. 2006 Transactions on computational systems biology VI. Berlin : Springer, cop. p. 198-220. 23 p.

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

Equivalence of metabolite fragments and flow analysis of isotopomer distributions for flux estimation

Rantanen, A., Maaheimo, H., Pitkänen, E., Rousu, J. & Ukkonen, E. 2006 Transactions on computational systems biology VI. Berlin : Springer, cop. p. 198-220. 23 p.

Publication: Contribution to book/anthology âº A3 Contribution to book/other compilations (refereed)

Kernel-based learning of hierarchical multilabel classification models

Rousu, J., Saunders, C., Szedmak, S. & Shawe-Taylor, J. 2006 In : Journal of machine learning research. 7, p. 1601-1626. 26 p.

Publication: Contribution to journal âº A1 Refereed journal article

Kernel-based learning of hierarchical multilabel classification models

Rousu, J., Saunders, C., Szedmak, S. & Shawe-Taylor, J. 2006 In : Journal of Machine Learning Research. 7, p. 1601-1626. 26 p.

Publication: Contribution to journal âº A1 Refereed journal article

Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes

Rantanen, A., Mielikäinen, T., Rousu, J., Maaheimo, H. & Ukkonen, E. 2006 In : Bioinformatics. 22, 10, p. 1198-1206. 9 p.

Publication: Contribution to journal âº A1 Refereed journal article

Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes

Rantanen, A., Mielikäinen, T., Rousu, J., Maaheimo, H. & Ukkonen, E. 2006 In : Bioinformatics. 22, 10, p. 1198-1206. 9 p.

Publication: Contribution to journal âº A1 Refereed journal article

Practical approximation of optimal multivariate discretization

Elomaa, T., Kujala, J. & Rousu, J. 2006 p. 612-621. 10 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Practical approximation of optimal multivariate discretization

Elomaa, T., Kujala, J. & Rousu, J. 2006 p. 612-621. 10 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Probabilistic modeling and machine learning in structural and systems biology: workshop proceedings, Tuusula, Finland, June 17-18, 2006

Rousu, J. (ed.), Kaski, S. (ed.) & Ukkonen, E. (ed.) 2006 Helsinki : Helsinki University Printing House. (Series of Publications B / Helsingin yliopisto; 4).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Probabilistic modeling and machine learning in structural and systems biology: workshop proceedings, Tuusula, Finland, June 17-18, 2006

Rousu, J. (ed.), Kaski, S. (ed.) & Ukkonen, E. (ed.) 2006 Helsinki : Helsinki University Printing House. (Series of Publications B / Helsingin yliopisto; 4).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Probabilistic Modeling and Machine Learning in Structural and Systems Biology: Workshop Proceedings; Tuusula, Finland, June 17-18

Rousu, J. (ed.), Kaski, S. (ed.) & Ukkonen, E. (ed.) 2006 University of Helsinki. (BMC Bioinformatics; Supplement 2).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

Probabilistic Modeling and Machine Learning in Structural and Systems Biology: Workshop Proceedings; Tuusula, Finland, June 17-18

Rousu, J. (ed.), Kaski, S. (ed.) & Ukkonen, E. (ed.) 2006 University of Helsinki. (BMC Bioinformatics; Supplement 2).

Publication: Book/anthology âº C2 Edited book, compilation, conference proceeding or special issue of journal

2005

Approximation algorithms for minimizing Empirical Error by Axis-Parallel Hyperplane

Elomaa, T., Kujala, J. & Rousu, J. 2005 p. 547-555.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Approximation algorithms for minimizing Empirical Error by Axis-Parallel Hyperplane

Elomaa, T., Kujala, J. & Rousu, J. 2005 p. 547-555.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Efficient computation of gapped substring kernels on large alphabets

Rousu, J. & Shawe-Taylor, J. 2005 In : Journal of machine learning research. 6, p. 1323-1344. 22 p.

Publication: Contribution to journal âº A1 Refereed journal article

Efficient computation of gapped substring kernels on large alphabets

Rousu, J. & Shawe-Taylor, J. 2005 In : Journal of Machine Learning Research. 6, p. 1323-1344. 22 p.

Publication: Contribution to journal âº A1 Refereed journal article

Finding feasible pathways in metabolic networks

Pitkänen, E., Rantanen, A., Rousu, J. H. & Ukkonen, E. 2005 p. 123-133. 11 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Finding feasible pathways in metabolic networks

Pitkänen, E., Rantanen, A., Rousu, J. H. & Ukkonen, E. 2005 p. 123-133. 11 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Flow analysis of metabolite fragments for flux estimation

Rantanen, A., Rousu, J., Pitkänen, E., Maaheimo, H. & Ukkonen, E. 2005 p. 242-255. 14 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Flow analysis of metabolite fragments for flux estimation

Rantanen, A., Rousu, J., Pitkänen, E., Maaheimo, H. & Ukkonen, E. 2005 p. 242-255. 14 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Isotopomer distribution computation from tandem mass spectrometric data with overlapping fragment spectra

Rousu, J. H., Rantanen, A., Ketola, R. A. & Kokkonen, J. T. 2005 In : Spectroscopy. 19, p. 53-67. 15 p.

Publication: Contribution to journal âº A1 Refereed journal article

Isotopomer distribution computation from tandem mass spectrometric data with overlapping fragment spectra

Rousu, J. H., Rantanen, A., Ketola, R. A. & Kokkonen, J. T. 2005 In : Spectroscopy. 19, p. 53-67. 15 p.

Publication: Contribution to journal âº A1 Refereed journal article

Learning Hierarchical Multi-Category Text Classification Models

Rousu, J., Saunders, C., Szedmak, S. & Shawe-Taylor, J. 2005 p. 745-752.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Learning Hierarchical Multi-Category Text Classification Models

Rousu, J., Saunders, C., Szedmak, S. & Shawe-Taylor, J. 2005 p. 745-752.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Planning isotopome measurements for estimation of metabolic fluxes

Rantanen, A., Mielikäinen, T., Rousu, J. H. & Ukkonen, E. 2005

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Planning isotopome measurements for estimation of metabolic fluxes

Rantanen, A., Mielikäinen, T., Rousu, J. H. & Ukkonen, E. 2005

Publication: Conference contribution âº A4 Article in conference publication (refereed)

2003

A method for estimating metabolic fluxes from incomplete isotopomer information

Rousu, J., Rantanen, A., Maaheimo, H., Pitkänen, E., Saarela, K. & Ukkonen, E. 2003 p. 88-103. 16 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

A method for estimating metabolic fluxes from incomplete isotopomer information

Rousu, J., Rantanen, A., Maaheimo, H., Pitkänen, E., Saarela, K. & Ukkonen, E. 2003 p. 88-103. 16 p.

Publication: Conference contribution âº A4 Article in conference publication (refereed)

Address: Department of Computer Science, P.O. 68 (Gustaf Hällströmin katu 2b), FI-00014 UNIVERSITY OF HELSINKI, FINLAND
Opening Hours: During spring and autumn semesters Mon - Fri 7.45 - 19.45 (7.45 am - 7.45 pm)
Phone: +358 9 1911 (University switch)
General e-mai: info [at] cs.helsinki.fi
Fax: +358 9 1915 1120

Juho Rousu

Contact Information

Principal Investigator of

Examiner for exams

Elements of BioinformaticsElements of BioinformaticsElements of Bioinformatics

Teaching

2011 autumn Elements of Bioinformatics Elements of Bioinformatics Elements of Bioinformatics

2011 autumn MSc Thesis Seminar on Bioinformatics MSc Thesis Seminar on Bioinformatics MSc Thesis Seminar on Bioinformatics

2011 spring Computational Methods of Systems Biology Computational Methods of Systems Biology Computational Methods of Systems Biology

2011 spring MSc Thesis Seminar on Bioinformatics MSc Thesis Seminar on Bioinformatics MSc Thesis Seminar on Bioinformatics

2010 autumn Seminar: Machine Learning in Bioinformatics Seminar: Machine Learning in Bioinformatics Seminar: Machine Learning in Bioinformatics

2010 spring Data Mining Project Data Mining Project Data Mining Project

2010 spring Data Mining Data Mining Data Mining

2010 spring PhD Student Seminar r Jatko-opintoseminaari

2009 spring Metabolic Modeling Metabolic Modeling Metabolic Modeling

2009 spring PhD Student Seminar r Jatko-opintoseminaari

2008 autumn PhD Student Seminar r Jatko-opintoseminaari

2008 autumn Seminar: Machine Learning in Bioinformatics Seminar: Machine Learning in Bioinformatics Seminar: Machine Learning in Bioinformatics

2008 spring Computational Data Analysis I Numerisk dataanalys I Laskennallinen data-analyysi I

2008 spring Seminar: Predicting Structured Data Seminar: Predicting Structured Data Seminar: Predicting Structured Data

2007 autumn Seminar: Regulatory Networks Seminar: Regulatory Networks Seminaari: Regulatory Networks

2007 spring Computational Data Analysis II Numerisk dataanalys II Laskennallinen data-analyysi II

2007 spring Metabolic Modeling Metabolic Modeling Metabolic Modeling

2007 spring Seminar: Computational Systems Biology Seminar: Computational Systems Biology Seminar: Computational Systems Biology

2007 spring Computational Data Analysis I Numerisk dataanalys I Laskennallinen data-analyysi I

2006 spring Computational Systems Biology Datorbaserad systembiologi Computational Systems Biology

2006 spring Convex Optimization Konvex optimering Convex Optimization

2006 autumn Seminar: Statistical Methods in Multilingual Information Access Seminar: Statistical Methods in Multilingual Information Access Seminar: Statistical Methods in Multilingual Information Access

2005 autumn Metabolic Modeling r Metabolian mallinnus

2003 spring Scientific Writing Att skriva vetenskaplig text Tieteellisen kirjoittamisen kurssi

2001 autumn Computational Biology Beräkningsbiologi Laskennallinen biologia

Publications

2012

2011

2010

2009

2008

2007

2006

2005

2003

Elements of Bioinformatics
Elements of Bioinformatics
Elements of Bioinformatics

2011 autumn
Elements of Bioinformatics

Elements of Bioinformatics

Elements of Bioinformatics

2011 autumn
MSc Thesis Seminar on Bioinformatics

MSc Thesis Seminar on Bioinformatics

MSc Thesis Seminar on Bioinformatics

2011 spring
Computational Methods of Systems Biology

Computational Methods of Systems Biology

Computational Methods of Systems Biology

2011 spring
MSc Thesis Seminar on Bioinformatics

MSc Thesis Seminar on Bioinformatics

MSc Thesis Seminar on Bioinformatics

2010 autumn
Seminar: Machine Learning in Bioinformatics

Seminar: Machine Learning in Bioinformatics

Seminar: Machine Learning in Bioinformatics

2010 spring
Data Mining Project

Data Mining Project

Data Mining Project

2010 spring
Data Mining

Data Mining

Data Mining

2010 spring
PhD Student Seminar

r

Jatko-opintoseminaari

2009 spring
Metabolic Modeling

Metabolic Modeling

Metabolic Modeling

2009 spring
PhD Student Seminar

r

Jatko-opintoseminaari

2008 autumn
PhD Student Seminar

r

Jatko-opintoseminaari

2008 autumn
Seminar: Machine Learning in Bioinformatics

Seminar: Machine Learning in Bioinformatics

Seminar: Machine Learning in Bioinformatics

2008 spring
Computational Data Analysis I

Numerisk dataanalys I

Laskennallinen data-analyysi I

2008 spring
Seminar: Predicting Structured Data

Seminar: Predicting Structured Data

Seminar: Predicting Structured Data

2007 autumn
Seminar: Regulatory Networks

Seminar: Regulatory Networks

Seminaari: Regulatory Networks

2007 spring
Computational Data Analysis II

Numerisk dataanalys II

Laskennallinen data-analyysi II

2007 spring
Metabolic Modeling

Metabolic Modeling

Metabolic Modeling

2007 spring
Seminar: Computational Systems Biology

Seminar: Computational Systems Biology

Seminar: Computational Systems Biology

2007 spring
Computational Data Analysis I

Numerisk dataanalys I

Laskennallinen data-analyysi I

2006 spring
Computational Systems Biology

Datorbaserad systembiologi

Computational Systems Biology

2006 spring
Convex Optimization

Konvex optimering

Convex Optimization

2006 autumn
Seminar: Statistical Methods in Multilingual Information Access

Seminar: Statistical Methods in Multilingual Information Access

Seminar: Statistical Methods in Multilingual Information Access

2005 autumn
Metabolic Modeling

r

Metabolian mallinnus

2003 spring
Scientific Writing

Att skriva vetenskaplig text

Tieteellisen kirjoittamisen kurssi

2001 autumn
Computational Biology

Beräkningsbiologi

Laskennallinen biologia