I'll stay on-list just in case, it's better to have feedback.
I think you want to take everything that belongs in the kernel and put it
under a subdirectory, say, "kernel", and lay it out exactly as it would be if
your patch were accepted into linus's tree. That is, the headers go in
kernel/include/linux, the modules in kernel/drivers/asterisk/whichever.
It nests your tree more deeply, but it's going to end up like that anyway
(you hope) so it might as well be that way now.
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