Curriculum vitae
- Full name:
- Jouni Leo Tapio Sirén
- Date of birth:
- 1979-06-28 in Helsinki, Finland
- Citizenship:
- Finland
Contact information
- Email:
- jouni.siren@iki.fi (private)
jltsiren@gmail.com (Viite)
jouni.siren@cs.helsinki.fi (work)
- Home page:
- http://iki.fi/jouni.siren/
- Phone:
- +358 40 518 4567
- Skype:
- jltsiren
- Address:
- Döbelninkatu
5 B 23
00260 Helsinki
Finland
Education
-
PhD student (Computer Science), University of Helsinki
- Master of Science (Computer Science), University of Helsinki, 9/2007
- Upper secondary school, Finnish-Russian School, Helsinki, Spring 1998
Employment
-
University of Helsinki, Department of Computer Science
-
Succinct Data Structures
- Doctoral Student 1/2009 -
- Researcher 4/2008 - 12/2008
- Project Researcher 1/2008 - 2/2008
- Research Assistant 8/2007 - 12/2007
- Teaching Assistant (40 courses and labs mostly in algorithms and
theory) 2001 - 2011
- Assistant 1/2002 - 7/2004
- Research Assistant, From Data to Knowledge, 5/2001 - 12/2001
-
Helsinki Institute for Information Technology
Publications
-
Paolo Ferragina, Jouni Sirén, and Rossano Venturini:
Distribution-Aware Compressed Full-Text Indexes.
Proc. ESA 2011,
Springer LNCS 6942, pp. 760-771,
Saarbrücken, Germany, September 5-7, 2011.
-
Jouni Sirén, Niko Välimäki, and Veli Mäkinen:
Indexing Finite Language Representation of Population Genotypes.
Proc. WABI 2011,
Springer LNCS 6833, pp. 270-281,
Saarbrücken, Germany, September 5-7, 2011.
-
Jouni Sirén:
Sampled Longest Common Prefix Array.
Proc. CPM 2010,
Springer LNCS 6129, pp. 227-237,
New York, USA, June 21-23, 2010.
-
Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, and Niko Välimäki:
Storage and Retrieval of Highly Repetitive Sequence Collections.
Journal of Computational Biology 17(3):281-308, 2010.
-
Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen, Gonzalo Navarro, Kim Nguyên, Jouni Sirén, and Niko Välimäki:
Fast In-Memory XPath Search using Compressed Indexes.
Proc. ICDE 2010,
IEEE, pp. 417-428,
Long Beach, California, USA, March 1-6, 2010.
-
Jouni Sirén:
Compressed Suffix Arrays for Massive Data.
Proc. SPIRE 2009,
Springer LNCS 5721, pp. 63-74,
Saariselkä, Finland, August 25-27, 2009.
-
Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, and Niko Välimäki:
Storage and Retrieval of Individual Genomes.
Proc. RECOMB 2009,
Springer LNCS 5541, pp. 121-137,
Tucson, Arizona, USA, May 18-21, 2009.
-
Jouni Sirén, Niko Välimäki, Veli Mäkinen, and Gonzalo Navarro:
Run-Length Compressed Indexes Are Superior for Highly Repetitive
Sequence Collections.
Proc. SPIRE 2008,
Springer LNCS 5280, pp. 164-175,
Melbourne, Australia, November 10-12, 2008.
Other scientific activities
- Organizing committee: CPM 2012
-
External reviewer
-
Journals:
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
Bioinformatics,
EURASIP Journal on Bioinformatics and Systems Biology,
Information Processing Letters,
Journal of Combinatorial Mathematics and Combinatorial Computing,
Journal of Experimental Algorithms,
Theoretical Computer Science
-
Conferences:
AAAI 2010,
CPM 2008,
CPM 2011,
SPIRE 2009,
SPIRE 2010,
SWAT 2010
- Nokia Scholarship, Nokia Foundation, 2010
- Young Researcher's Grant, Research Foundation of the University of Helsinki,
2008
Administrative and organizational service
-
University of Helsinki
- Human Resources Policy Follow-up Group 2007 - 2009
- Data Privacy Group 2006 - 2007
- Degree Structure Reform Group, Faculty of Science, 2003 - 2005
- Degree Structure Reform Group, Department of Computer Science, 2003 - 2005
-
Student Union of the University
of Helsinki
- Representative Council 2004 (Deputy Member 2005 - 2007)
- Deputy Member of Central Election Board 2009
- Committees and Working Groups 2003 - 2011
-
HYY Group
- Supervisory Board 2006 - 2007
- Real Estate Management Board 2005
-
Ropecon (the largest Nordic role-playing
convention)
- Organizing Committee 2002 - 2006, 2008 - 2012 (co-chair 2006, 2011)
- Board 2002 - 2008 (chair 2004)
-
Viite
-
Student organizations at University of Helsinki
Other information
- Language skills: Finnish (native), English, Russian, Swedish (basics)
- Hobbies: traveling, role-playing games, movies