Analysis of genes having pattern m_organization_of_chromosome_structure_orfnum2SD_n17 in their upstream region

There is about 356 genes out of 6312 (5.64 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cem1
89
14
2.789
0.05371
0.06574
134
19
2.514
0.05622
0.03177

pet127
4
4
17.73
0.1032
0.001275
4
4
17.73
0.1032
0.001271

rpl27a (**4)
316
34
1.908
0.05352
0.04289
476
46
1.713
0.05291
0.04577

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cem1	89	14	2.789	0.05371	0.06574	134	19	2.514	0.05622	0.03177
pet127	4	4	17.73	0.1032	0.001275	4	4	17.73	0.1032	0.001271
rpl27a (**4)	316	34	1.908	0.05352	0.04289	476	46	1.713	0.05291	0.04577