Leena Salmela

Postdoctoral researcher

Department of Computer Science
P. O. Box 68 (Gustaf Hällströmin katu 2 b)
FIN-00014 University of Helsinki, FINLAND

Email: Firstname.Lastname@cs.Helsinki.FI
Room: B230

Research Interests

Recent publications

V. Mäkinen, L. Salmela, and J. Ylinen. Normalized N50 assembly metric using gap-restricted co-linear chaining. BMC Bioinformatics, Volume 13, 2012, 255.
L. Salmela: Average complexity of backward q-gram string matching algorithms. Information Processing Letters, Volume 112, Issue 11, 2012, 433–437.
L. Salmela, V. Mäkinen, N. Välimäki, J. Ylinen, and E. Ukkonen: Fast scaffolding with small independent mixed integer programs. Bioinformatics, Volume 27, Issue 23, 2011, 3259–3265.
L. Salmela and J. Schröder: Correcting errors in short reads by multiple alignments. Bioinformatics, Volume 27, Issue 11, 2011, 1455–1461. (Also in HiTSeq 2011).
L. Salmela: Merkkijonoalgoritmeja monen hahmon hakuun. Tietojenkäsittelytiede 31, 2010, 70–83.
F. Claude, G. Navarro, H. Peltola, L. Salmela and J. Tarhio: String matching with alphabet sampling. Journal of Discrete Algorithms, Volume 11, 2012, 37–50.
L. Salmela: Correction of sequencing errors in a mixed set of reads. Bioinformatics, Volume 26, Issue 10, 2010, 1284–1290. (Award for best paper submitted to HiTSeq 2010).