Department information

 

Markus Heinonen

M.Sc., Ph.D. Student at FICS graduate school, researcher

Room: B215

Phone: +358 9 191 51266

Mobile: +358 44 2942600

Email: markus.heinonen@cs.Helsinki.FI

Personal email: markus.heinonen@gmail.com

Participations

• SYSFYS
• UR-ENZYMES
• Algodan

Teaching

• Programming in Python, fall 2009, assistant
• Metabolic Modeling, fall 2008, assistant
• Student tutor at LuK-HOPS, spring 2008 onwards
• Practical course on biodatabases, fall 2007, assistant
• Practical course on biodatabases, fall 2006, assistant

Software

• Fragment Identificator (FiD)

Publications

• Su, H., Heinonen, M., Rousu, J. Structured Output Prediction of Anti-Cancer Drug Activity. PRIB'10, Lecture Notes in Bioinformatics, accepted. (2010)
• Heinonen, M., Lappalainen, S., Mielikäinen, T., Rousu, J. Computing Atom Mappings for Biochemical Reactions without Subgraph Isomorphism. J. of Computational Biology (2010), accepted.
  [preliminary pdf ]
• Heinonen, M., Rantanen, A., Mielikäinen, T., Kokkonen, J., Kiuru, J., Ketola, R.A., Rousu, J. FiD: a software for ab initio structural identification of product ions from tandem mass spectrometric data. Rapid comm. in mass spec. Vol. 22 (2008), pp. 3043-3052.
• Heinonen, M., Rantanen, A., Mielikäinen, T., Pitkänen, E., Kokkonen, J., Rousu, J. Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data. German Conference on Bioinformatics 2006 (GCB 06). Lecture Notes in Informatics Vol. P-83 (2006), pp. 40-53.
  [pdf ] [software ] [software ]
• Heinonen, M., Mielikäinen, T., Pitkänen, E., Rantanen, A. Inferring Fragmentations of Molecules from Tandem Mass Spectrometer Data. BREW 2006

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Previous update: 01.07.2010 - Markus Heinonen