HaploParser: Haplotype Inference via Combinatoric Parsing

Introduction

Program HaploParser solves so-called genotype phasing (or haplotype inference) problem. The program (and its source) is mainly for educational and for research purposes. More accurate programs for the genotype phasing are, e.g. BACH and HIT.

The input (and output) format of HaploParser is the same as in BACH and HIT, see their documentation. The usage of HaploParser is explained in a README file included in its source package.

Program with Source Code

Program HaploParser with source code (under GNU public license) can be downloaded from here.

References

[1] Pasi Rastas, Esko Ukkonen: Haplotype Inference via Hierarchical Genotype Parsing, 7th Workshop on Algorithms in Bioinformatics - WABI 2007 pdf

Pasi Rastas

Last modified: Thu Oct 29 18:04:59 EET 2009