Homepage of Veli Mäkinen
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Veli Mäkinen, PhD, Academy Research Fellow Department of Computer Science P. O. Box 68 (Gustaf Hällströmin katu 2b) FIN-00014 University of Helsinki Finland Room: B230 Phone: +358 9 191 51281 Mobile: +358 50 4009152 Email: First.Last(at)cs.helsinki.fi Also affiliated with: |
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Recent activitiesPC member, SPIRE 2010 Tutkijalinjan vastuuhenkilö
ResearchResearch group SuDS Publications Projects Software
TeachingSeminar: Sequence Assembly, Spring 2010 Tieteellisen kirjoittamisen kurssi, bioinformatiikan ryhmä, spring 2009 Tiedon tiivistämisen tekniikat, autumn 2008 Advanced Data Structures, spring 2007 Data Compression Techniques, spring 2006 Bioinformatiikan perusteet, autumn 2005 Opettajatuutorointi, 2005-2007 Computational Geometry -seminar, spring 2005 (Bielefeld) Data Compression Techniques, spring 2005 (Bielefeld) Scientific writing, algorithms group, spring 2004 String Processing Methods, autumn 2003 Opettajatuutorointi, 2002-2004
Past activitiesCo-organizer, The Fourth Workshop on Compression, Text, and Algorithms 2009. PC member, SPIRE 2009, SPIRE 2007, SPIRE 2006, SPIRE 2005 Organizer, ICML/UAI/COLT 2008 PC member, CPM 2008 Organizer, Merkkijonopäivä 2008 (national seminar on string processing) Program Chair, Summer School on Algorithmic Data Analysis Local organizer, PMSB 2006 Workshop Recent trends in Stringology - study group, spring 2004 FDK Research Seminar, autumn 2003 |
Selected publicationsFast In-Memory XPath Search using Compressed Indexes. Accepted to ICDE 2010. (with Arroyuelo et al.) Storage and Retrieval of Individual Genomes. In Proc. RECOMB 2009, LNCS 5541, pp. 121-137, 2009. (with Navarro, Sirén, Välimäki) Extended version accepted to Journal of Computational Biology. Compressed Full-Text Indexes. ACM Computing Surveys, Vol. 39, No. 1, Article 2, 2007. (with Navarro) Compressed Representations of Sequences and Full-Text Indexes. ACM Transactions on Algorithms, Vol. 3, Issue 2, Article 20, May 2007. (with Ferragina & Manzini & Navarro) Combinatorial Approaches for Mass Spectra Recalibration. IEEE/ACM Transactions on Computational Biology and Bioinformatics,5(1):91-100, 2008. (with Böcker) Transposition Invariant String Matching, Journal of Algorithms, 56(2):124-153, 2005. (with Navarro & Ukkonen) Filtering methods for content-based retrieval on indexed symbolic music databases. To appear in Information Retrieval. (with Lemström & Mikkilä) Complete list here... 
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