This page is for the supplementary material for the manuscript "Pan-Genome Read Alignment to Improve Variant Calling".

Source code:

• PanVC
• CHIC Aligner

Reproducibility:

• Download scripts to generate/fetch input data for the experiments
• Download scripts to run the experiments

Pan-genome indexing:

• Download pre-build index (9.6GB) for 2001 genomes (including only numbered-chromosomes)