public class InhPMMParameterSet extends de.jstacs.parameters.SequenceScoringParameterSet<InhomogeneousPMM>
Modifier and Type | Field and Description |
---|---|
protected static java.lang.String |
XMLTAG |
Constructor and Description |
---|
InhPMMParameterSet(de.jstacs.data.AlphabetContainer con,
int length,
byte order,
double ESS,
double treePriorConstant) |
InhPMMParameterSet(java.lang.StringBuffer sb) |
Modifier and Type | Method and Description |
---|---|
InhPMMParameterSet |
clone() |
void |
fromXML(java.lang.StringBuffer sb) |
java.lang.String |
getInstanceComment() |
java.lang.String |
getInstanceName() |
java.lang.String |
getXMLTAG() |
java.lang.StringBuffer |
toXML() |
equals, getAlphabetContainer, getLength, getNumberOfParameters, getParameterAt, hasDefaultOrIsSet, reset
getInstance, getInstanceClass
protected static final java.lang.String XMLTAG
public InhPMMParameterSet(de.jstacs.data.AlphabetContainer con, int length, byte order, double ESS, double treePriorConstant) throws java.lang.Exception
java.lang.Exception
public InhPMMParameterSet(java.lang.StringBuffer sb) throws de.jstacs.io.NonParsableException
de.jstacs.io.NonParsableException
public java.lang.String getInstanceComment()
getInstanceComment
in class de.jstacs.parameters.InstanceParameterSet<InhomogeneousPMM>
public java.lang.String getInstanceName()
getInstanceName
in class de.jstacs.parameters.InstanceParameterSet<InhomogeneousPMM>
public java.lang.String getXMLTAG()
public java.lang.StringBuffer toXML()
toXML
in interface de.jstacs.Storable
toXML
in class de.jstacs.parameters.SequenceScoringParameterSet<InhomogeneousPMM>
public void fromXML(java.lang.StringBuffer sb) throws de.jstacs.io.NonParsableException
fromXML
in class de.jstacs.parameters.SequenceScoringParameterSet<InhomogeneousPMM>
de.jstacs.io.NonParsableException
public InhPMMParameterSet clone() throws java.lang.CloneNotSupportedException
clone
in class de.jstacs.parameters.SequenceScoringParameterSet<InhomogeneousPMM>
java.lang.CloneNotSupportedException