- ID - Variable in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.dataStructures.SymbolSet
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- InhomogeneousPMM - Class in de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous
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This class represents Inhomogeneous Parsimonious Markov Models (PMMs).
- InhomogeneousPMM(InhPMMParameterSet) - Constructor for class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous.InhomogeneousPMM
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Constructs an inhomogeneous parsimonious Markov model (PMM) from a
- InhomogeneousPMM(StringBuffer) - Constructor for class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous.InhomogeneousPMM
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The standard constructor for the interface Storable
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- InhPMMParameterSet - Class in de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous
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ParameterSet for InhomogeneousPMM class
- InhPMMParameterSet(AlphabetContainer, int, byte, double, double) - Constructor for class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous.InhPMMParameterSet
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- InhPMMParameterSet(StringBuffer) - Constructor for class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous.InhPMMParameterSet
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- initForSampling(String) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.AbstractVariableStructureModel
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- initForSampling(String) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.AbstractParsimoniousModel
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- inSamplingMode - Variable in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.AbstractParsimoniousModel
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- isExtendableBy(SymbolSet) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.dataStructures.Partition
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Checks if the Partition could be extended by the given SymbolSet.
- isInitialized() - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.latentVariables.ZOOPSModel
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- isInitialized() - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.AbstractParsimoniousModel
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- isSubsetOf(SymbolSet) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.dataStructures.SymbolSet
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- isTrained() - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.inhomogeneous.InhomogeneousPMM
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- isValidPartition() - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.dataStructures.Partition
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- isValidPartitionUnderSizeConstraint(int, int) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.variableStructure.parsimonious.dataStructures.Partition
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