Analysis of genes having pattern ABF1 in their upstream region

There is about 511 genes out of 6312 (8.10 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
ymr014w
466
59
1.564
0.05256
0.09338
646
80
1.53
0.05911
0.01792
yor078w
539
70
1.604
0.06036
0.01238
756
87
1.421
0.05266
0.1039