Analysis of genes having pattern CSRE in their upstream region

There is about 816 genes out of 6312 (12.93 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

msu1
188
40
1.646
0.0505
0.3191
323
68
1.628
0.06502
0.01388

she4
942
154
1.265
0.05714
0.2828
1172
194
1.28
0.06697
0.02804

sin3
346
71
1.587
0.0636
0.02109
515
93
1.397
0.05669
0.1651

ymr293c
348
70
1.556
0.06092
0.04215
495
88
1.375
0.05315
0.3532

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
msu1	188	40	1.646	0.0505	0.3191	323	68	1.628	0.06502	0.01388
she4	942	154	1.265	0.05714	0.2828	1172	194	1.28	0.06697	0.02804
sin3	346	71	1.587	0.0636	0.02109	515	93	1.397	0.05669	0.1651
ymr293c	348	70	1.556	0.06092	0.04215	495	88	1.375	0.05315	0.3532