Analysis of genes having pattern ECB in their upstream region

There is about 356 genes out of 6312 (5.64 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"dig1, dig2"
437
45
1.826
0.05801
0.01228
580
56
1.712
0.05868
0.009423

yor080w (**3)
335
36
1.905
0.05504
0.02874
507
44
1.539
0.04218
0.5421

FKS1 (tet promoter)
146
20
2.429
0.05554
0.03496
224
28
2.216
0.05921
0.012

HMG2 (tet promoter)
555
54
1.725
0.0583
0.01058
736
73
1.759
0.0709
0.0001966

KAR2 (tet promoter)
768
73
1.685
0.06598
0.0009454
1064
85
1.416
0.0501
0.0875

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"dig1, dig2"	437	45	1.826	0.05801	0.01228	580	56	1.712	0.05868	0.009423
yor080w (**3)	335	36	1.905	0.05504	0.02874	507	44	1.539	0.04218	0.5421
FKS1 (tet promoter)	146	20	2.429	0.05554	0.03496	224	28	2.216	0.05921	0.012
HMG2 (tet promoter)	555	54	1.725	0.0583	0.01058	736	73	1.759	0.0709	0.0001966
KAR2 (tet promoter)	768	73	1.685	0.06598	0.0009454	1064	85	1.416	0.0501	0.0875