Analysis of genes having pattern HAP234 in their upstream region

There is about 116 genes out of 6312 (1.84 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
bim1 (**15)
217
11
2.758
0.0458
0.2093
330
16
2.638
0.05312
0.03671
cka2
146
8
2.982
0.04206
0.4683
238
15
3.429
0.0662
0.00257
gpa2
35
4
6.219
0.05349
0.156
54
7
7.054
0.07714
0.002577
rts1
144
16
6.046
0.1058
4.731e-07
213
21
5.365
0.1119
1.736e-08
sbp1
31
2
3.511
0.0243
5.235
58
6
5.629
0.06121
0.03413
she4
942
35
2.022
0.05921
0.002851
1172
41
1.904
0.05972
0.001856
ymr014w
466
19
2.219
0.04762
0.09976
646
25
2.106
0.0517
0.03147