Analysis of genes having pattern MCM1 in their upstream region

There is about 410 genes out of 6312 (6.50 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
"dig1, dig2"
437
51
1.797
0.0609
0.006601
580
60
1.593
0.05385
0.042
gas1
248
33
2.049
0.05871
0.0141
335
44
2.022
0.06696
0.001362
pet127
4
4
15.4
0.09574
0.002443
4
4
15.4
0.09574
0.002435
swi4
710
76
1.648
0.06519
0.00164
943
89
1.453
0.05506
0.03052
yor080w (**3)
335
40
1.838
0.05557
0.02863
507
50
1.518
0.04438
0.3991
CDC42 (tet promoter)
872
93
1.642
0.07239
0.0001429
1146
114
1.531
0.07107
0.0001906
ERG11 (tet promoter)
1641
148
1.388
0.06636
0.0008071
1980
168
1.306
0.06056
0.005116
FKS1 (tet promoter)
146
32
3.374
0.09833
3.426e-07
224
43
2.955
0.1013
4.185e-08
HMG2 (tet promoter)
555
67
1.859
0.07416
0.0001074
736
86
1.799
0.08078
8.241e-06
KAR2 (tet promoter)
768
81
1.624
0.06571
0.001363
1064
93
1.346
0.04639
0.29