Analysis of genes having pattern RAP1 in their upstream region

There is about 257 genes out of 6312 (4.07 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

rps24a (**9)
267
23
2.116
0.04978
0.08899
420
33
1.93
0.05292
0.03558

vac8
121
23
4.668
0.1066
9.643e-08
199
30
3.703
0.1016
8.162e-08

HMG2 (tet promoter)
555
42
1.859
0.0569
0.01109
736
56
1.869
0.06715
0.0004344

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
rps24a (**9)	267	23	2.116	0.04978	0.08899	420	33	1.93	0.05292	0.03558
vac8	121	23	4.668	0.1066	9.643e-08	199	30	3.703	0.1016	8.162e-08
HMG2 (tet promoter)	555	42	1.859	0.0569	0.01109	736	56	1.869	0.06715	0.0004344