Analysis of genes having pattern RPN4 in their upstream region

There is about 180 genes out of 6312 (2.85 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

clb6
3
2
23.38
0.08367
0.03103
7
2
10.02
0.05162
0.3592

ubr2
33
17
18.06
0.2122
0
50
19
13.33
0.189
0

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
clb6	3	2	23.38	0.08367	0.03103	7	2	10.02	0.05162	0.3592
ubr2	33	17	18.06	0.2122	0	50	19	13.33	0.189	0