Analysis of genes having pattern Ume6 in their upstream region

There is about 116 genes out of 6312 (1.84 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

sap30
97
8
4.488
0.05989
0.02676
152
8
2.864
0.04041
0.6473

sin3
346
20
3.145
0.07114
0.0004291
515
25
2.641
0.06747
0.0006129

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
sap30	97	8	4.488	0.05989	0.02676	152	8	2.864	0.04041	0.6473
sin3	346	20	3.145	0.07114	0.0004291	515	25	2.641	0.06747	0.0006129