Analysis of genes having pattern m_RPE11 in their upstream region

There is about 140 genes out of 6312 (2.22 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

vac8
121
11
4.099
0.06564
0.00602
199
13
2.945
0.05337
0.04825

KAR2 (tet promoter)
768
34
1.996
0.05668
0.007483
1064
42
1.78
0.05382
0.01248

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
vac8	121	11	4.099	0.06564	0.00602	199	13	2.945	0.05337	0.04825
KAR2 (tet promoter)	768	34	1.996	0.05668	0.007483	1064	42	1.78	0.05382	0.01248