Analysis of genes having pattern m_RPE49 in their upstream region

There is about 101 genes out of 6312 (1.60 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

vac8
121
6
3.099
0.03767
1.074
199
11
3.455
0.05678
0.02744

yml018c
2
2
62.5
0.1396
None
3
2
41.66
0.1131
0.005598

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
vac8	121	6	3.099	0.03767	1.074	199	11	3.455	0.05678	0.02744
yml018c	2	2	62.5	0.1396	None	3	2	41.66	0.1131	0.005598