Analysis of genes having pattern m_RPE6 in their upstream region

There is about 77 genes out of 6312 (1.22 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

anp1
384
11
2.348
0.03841
0.7341
541
18
2.727
0.05906
0.00658

vac8
121
10
6.775
0.08986
8.648e-05
199
13
5.355
0.0875
4.008e-05

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
anp1	384	11	2.348	0.03841	0.7341	541	18	2.727	0.05906	0.00658
vac8	121	10	6.775	0.08986	8.648e-05	199	13	5.355	0.0875	4.008e-05