Analysis of genes having pattern m_RRSE3 in their upstream region

There is about 726 genes out of 6312 (11.50 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"arg5,6"
50
14
2.434
0.04913
0.2769
102
27
2.301
0.06427
0.01023

she4
942
135
1.246
0.04942
0.9156
1172
174
1.291
0.06299
0.03829

ymr014w
466
84
1.567
0.06649
0.006966
646
106
1.427
0.06214
0.02902

yor078w
539
117
1.887
0.1064
4.729e-09
756
144
1.656
0.09738
1.729e-07

ERG11 (tet promoter)
1641
233
1.234
0.06446
0.03345
1980
266
1.168
0.05638
0.345

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"arg5,6"	50	14	2.434	0.04913	0.2769	102	27	2.301	0.06427	0.01023
she4	942	135	1.246	0.04942	0.9156	1172	174	1.291	0.06299	0.03829
ymr014w	466	84	1.567	0.06649	0.006966	646	106	1.427	0.06214	0.02902
yor078w	539	117	1.887	0.1064	4.729e-09	756	144	1.656	0.09738	1.729e-07
ERG11 (tet promoter)	1641	233	1.234	0.06446	0.03345	1980	266	1.168	0.05638	0.345