Analysis of genes having pattern m_amino-acid_degradation_orfnum2SD_n24 in their upstream region

There is about 263 genes out of 6312 (4.17 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

bul1
35
7
4.8
0.05972
0.04207
61
7
2.754
0.0369
1.419

pet127
4
4
24
0.1209
0.0002917
4
4
24
0.1209
0.0002908

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
bul1	35	7	4.8	0.05972	0.04207	61	7	2.754	0.0369	1.419
pet127	4	4	24	0.1209	0.0002917	4	4	24	0.1209	0.0002908