Analysis of genes having pattern m_amino-acid_degradation_orfnum2SD_n8 in their upstream region

There is about 499 genes out of 6312 (7.91 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

msu1
188
28
1.884
0.04874
0.1923
323
48
1.88
0.0641
0.004295

pet127
4
4
12.65
0.08621
0.006432
4
4
12.65
0.08621
0.006412

rad57
91
15
2.085
0.04083
0.8779
155
26
2.122
0.05518
0.04757

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
msu1	188	28	1.884	0.04874	0.1923	323	48	1.88	0.0641	0.004295
pet127	4	4	12.65	0.08621	0.006432	4	4	12.65	0.08621	0.006412
rad57	91	15	2.085	0.04083	0.8779	155	26	2.122	0.05518	0.04757