Analysis of genes having pattern m_amino-acid_transport_orfnum2SD_n13 in their upstream region

There is about 212 genes out of 6312 (3.36 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

jnm1
12
4
9.925
0.07283
0.01975
30
5
4.962
0.05142
0.1882

pep12
76
8
3.134
0.04453
0.3786
97
11
3.376
0.05602
0.04145

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
jnm1	12	4	9.925	0.07283	0.01975	30	5	4.962	0.05142	0.1882
pep12	76	8	3.134	0.04453	0.3786	97	11	3.376	0.05602	0.04145