Analysis of genes having pattern m_fermentation_orfnum2SD_n10 in their upstream region

There is about 75 genes out of 6312 (1.19 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

kim4
119
6
4.243
0.04946
0.1754
199
11
4.652
0.07244
0.001284

sir4
126
6
4.008
0.04723
0.2427
189
9
4.008
0.05813
0.02618

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
kim4	119	6	4.243	0.04946	0.1754	199	11	4.652	0.07244	0.001284
sir4	126	6	4.008	0.04723	0.2427	189	9	4.008	0.05813	0.02618