Analysis of genes having pattern m_glyoxylate_cycle_orfnum2SD_n8 in their upstream region

There is about 746 genes out of 6312 (11.82 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

anp1
384
72
1.586
0.06303
0.01798
541
88
1.376
0.0522
0.3262

bul1
35
13
3.143
0.06098
0.03184
61
19
2.635
0.06242
0.01877

gas1
248
51
1.74
0.0616
0.02137
335
66
1.667
0.06563
0.008369

imp2
33
12
3.077
0.05747
0.0633
62
21
2.866
0.07126
0.002561

pet127
4
4
8.461
0.06926
0.04118
4
4
8.461
0.06926
0.04105

she4
942
150
1.347
0.06561
0.01763
1172
184
1.328
0.07065
0.004727

yer050c
748
123
1.391
0.06382
0.02335
995
157
1.335
0.06568
0.01806

ERG11 (tet promoter)
1641
245
1.263
0.0718
0.004284
1980
273
1.167
0.05731
0.3171

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
anp1	384	72	1.586	0.06303	0.01798	541	88	1.376	0.0522	0.3262
bul1	35	13	3.143	0.06098	0.03184	61	19	2.635	0.06242	0.01877
gas1	248	51	1.74	0.0616	0.02137	335	66	1.667	0.06563	0.008369
imp2	33	12	3.077	0.05747	0.0633	62	21	2.866	0.07126	0.002561
pet127	4	4	8.461	0.06926	0.04118	4	4	8.461	0.06926	0.04105
she4	942	150	1.347	0.06561	0.01763	1172	184	1.328	0.07065	0.004727
yer050c	748	123	1.391	0.06382	0.02335	995	157	1.335	0.06568	0.01806
ERG11 (tet promoter)	1641	245	1.263	0.0718	0.004284	1980	273	1.167	0.05731	0.3171