Analysis of genes having pattern m_intracellular_communication_orfnum2SD_n4 in their upstream region

There is about 198 genes out of 6312 (3.14 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cka2
146
14
3.057
0.0577
0.02203
238
17
2.277
0.04644
0.1782

vac8
121
14
3.688
0.0683
0.00261
199
15
2.403
0.04642
0.1895

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cka2	146	14	3.057	0.0577	0.02203	238	17	2.277	0.04644	0.1782
vac8	121	14	3.688	0.0683	0.00261	199	15	2.403	0.04642	0.1895