Analysis of genes having pattern m_organization_of_cell_wall_orfnum2SD_n10 in their upstream region

There is about 141 genes out of 6312 (2.23 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cka2
146
10
3.066
0.04851
0.1513
238
15
2.821
0.05505
0.02944

kim4
119
10
3.762
0.05827
0.02679
199
13
2.924
0.053
0.05187

pet127
4
4
44.77
0.1666
1.332e-05
4
4
44.77
0.1666
1.328e-05

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cka2	146	10	3.066	0.04851	0.1513	238	15	2.821	0.05505	0.02944
kim4	119	10	3.762	0.05827	0.02679	199	13	2.924	0.053	0.05187
pet127	4	4	44.77	0.1666	1.332e-05	4	4	44.77	0.1666	1.328e-05