Analysis of genes having pattern m_stress_response_orfnum2SD_n4 in their upstream region

There is about 172 genes out of 6312 (2.72 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
msu1
188
12
2.342
0.04006
0.6365
323
21
2.386
0.05473
0.02457
ERG11 (tet promoter)
1641
71
1.588
0.05969
0.001446
1980
73
1.353
0.04153
0.2701