Analysis of genes having pattern m_tricarboxylic-acid_pathway_orfnum2SD_n6 in their upstream region

There is about 409 genes out of 6312 (6.48 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

pet127
4
4
15.43
0.09586
0.002483
4
4
15.43
0.09586
0.002476

yel044w
463
50
1.667
0.05314
0.05243
660
69
1.613
0.05949
0.009237

FKS1 (tet promoter)
146
27
2.854
0.0772
0.000169
224
31
2.136
0.06002
0.01087

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
pet127	4	4	15.43	0.09586	0.002483	4	4	15.43	0.09586	0.002476
yel044w	463	50	1.667	0.05314	0.05243	660	69	1.613	0.05949	0.009237
FKS1 (tet promoter)	146	27	2.854	0.0772	0.000169	224	31	2.136	0.06002	0.01087