HappyDoc Generated Documentation mabslib/Output.py

mabslib / Output.py 

Takes care of the output formating.

Also gzip related.

Imported Modules   

from cStringIO import StringIO
from time import localtime
import types

Functions   
  formatalignCHAOS 
formatalignCHAOS ( alignment )

Formats the alignment as anchoring file for DIALIGN2 (a la CHAOS) Not quite

  savematch 
savematch ( data,  filename='' )

data must have the following format: dictionary from Matrix to Sequence to Index to Score

  formatalign 
formatalign ( alignment,  seq=None )

Formats the alignment for human use

  get 
get ( data )

Returns the data as a string formated as GFF.

data must have the following format: dictionary from Matrix to Sequence to Index to Score

  formatalignGFF 
formatalignGFF ( alignment )

Formats the alignment for GFF file

  savealign 
savealign ( alignment,  filename='' )

saves the alignment

  showmatch 
showmatch ( data )

data must have the following format: dictionary from Matrix to Sequence to Index to Score

Classes   

This document was automatically generated Thu Feb 19 15:16:16 2004 by HappyDoc version 3.0.a1