Commandline.py
Support for commandline interface.
Interface.py
Most of the Python functionality and gzip interface
Matrix.py
Python interface and logic to TFBS matrix matching
Multialign.py
Python interface and logic for multiple alignment.
Output.py
Takes care of the output formating.
Sequence.py
Sequence API.
mabsClient.py
mabsServer.py
matrixTest.py