FILES	= merge.stub filter-mappings.stub
FILES2	= mip-scaffolder.plstub

TARGETS	= $(FILES:.stub=.sh)
TARGETS2	= $(FILES2:.plstub=.pl)

all:		$(TARGETS) $(TARGETS2)

$(TARGETS):	%.sh: %.stub
		echo "#!/bin/bash" > $@
		echo "PATH2SCAFFOLDER=$(PATH2SCAFFOLDER)" >> $@
		cat $< >> $@
		chmod u+x $@

$(TARGETS2):	%.pl: %.plstub
		echo "#!/usr/bin/perl" > $@
		echo "\$$path2scaffolder=\"$(PATH2SCAFFOLDER)\";" >> $@
		cat $< >> $@
		chmod u+x $@

clean:
		rm $(TARGETS)
