CSBB Software Releases

This page describes software releases by the Computational Systems Biology and Bioinformatics group.

ReTrace

ReTrace is a computational tool for finding branching pathways in genome-scale metabolic networks.

ReMatch

ReMatch is a tool for automating the biochemical nomenclature matching problem encountered in construction of metabolic network models.

Positional Isotopomer Distribution Calculator

Positional Isotopomer Distribution Calculator (PIDC) is a software package that computes a positional isotopomer distribution of the selected atom type of the compound when mass spectra of the compound and its fragments are given.

Fragment Identificator

Fragment Identificator (FiD) is an Windows application for identification of molecular fragments from tandem mass spectrometry data when molecule and spectrum are given.

Pathway Assistant

Pathway Assistant offers tools for metabolic modeling.

Note: Pathway Assistant is offline for now.

Previous update: 16.03.2010 - Esa Pitkänen